rs38940198 SNP Detail

Summary

• ID
  rs38940198
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37167139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCCTCTT TCTTGTCTGG
  GCTTTTCCAT TTCACTACCC ACGAGGGGAT GGGGAACTGA AAACAGCAGT CCTACAAGTC
  ATCAACTCTG TGTGACGTTG GGTTTCCTGC AGTGCTACCT GTCTTGAGCA GTTCTGTGCC
  CTGACACAAA GCAAATCCGG TGCTCTGTGT AAGTGAACGC AGTGGGACCA CCGCGCTGAC
  W
  CATGATCTGC GGGCTCTCTT TGGGAGCCCT GGAAGTGTCT CAGGGAGGAA AATGATCCCC
  AAACCCACCT CTCAGGTTCT GGTTCTGCTT GCTCAGACGA ATCTGAGTTC ACTGAGTCTG
  CTGGAGCTTT CCTAAAGCTC CACTAGCCAG TAACTAACTA TGTTGCCAAT ACTCCAATCT
  CCACTTTCCA GGCACGCAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50674827	NES14008194	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38940198					SNP	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674827	NES14008194	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37167139 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	256 bp distal
Gm48081	predicted gene, 48081	within coordinates
Rr676656	regulatory region 676656	440 bp distal
Rr676657	regulatory region 676657	335 bp distal
Rr676658	regulatory region 676658	116 bp distal
Rr676659	regulatory region 676659	within coordinates
Rr676660	regulatory region 676660	193 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	430 bp upstream
Tssr88821	transcription start site region 88821	479 bp upstream
Tssr88822	transcription start site region 88822	451 bp upstream
Tssr88823	transcription start site region 88823	424 bp upstream
Tssr88824	transcription start site region 88824	401 bp upstream
Tssr88825	transcription start site region 88825	382 bp upstream
Tssr88826	transcription start site region 88826	290 bp upstream
Tssr88827	transcription start site region 88827	208 bp upstream
Tssr88828	transcription start site region 88828	178 bp upstream
Tssr88829	transcription start site region 88829	160 bp upstream
Tssr88830	transcription start site region 88830	132 bp upstream
Tssr88831	transcription start site region 88831	99 bp upstream