rs38941755 SNP Detail

Summary

• ID
  rs38941755
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12731163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCCCACA CCTTTATTCC
  CAGCAATAGG GAGACAGTGG CAGCTCATTC TCTGTAGGTT CAAGGTCATC CTGATCTACA
  TACCGAGTTC CAGGATAGCC AGGGCTACAC AGAGAAACCT TGTCTCGAAA AAAAAAAAAT
  TAATTGTTTA AATGAAATTG AAAGATTTAG AGAAGTCTCC AAGTGGTAAC CCTAGAATTA
  Y
  TTTCTGGGTG ACCTATATTT TGACCCTTAA TTGCATGGAC TGGGAATAGA TACAACAAAA
  GGCTCTCTGC CTAGCTTCCA GAAACGTCTG ACTTCCCTTG CTTCTGTCCC TTTCTATCCT
  TTCTGCCTCT AGGGCACTCA CCTGGATCCA CAATCAGCAC ACTGGCCCCA GAGCTCCGTA
  CAGAGTGTAG CAAGGGCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51468904	NES13984157	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	T		T	T	C		C
ss322107107	CHEV_7_13582585	CHEVERUD	SCREENING_POP	f	SNP						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs38941755					SNP	T	C	C	T	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51468904	NES13984157	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12731163 () rs orientation: forward

Symbol	Name	Function Class
Rr642427	regulatory region 642427	904 bp proximal
Slc27a5	solute carrier family 27 (fatty acid transporter), member 5	within coordinates
Tssr2079	transcription start site region 2079	1840 bp upstream
Tssr64508	transcription start site region 64508	1885 bp upstream
Tssr70630	transcription start site region 70630	180 bp downstream
Tssr70631	transcription start site region 70631	431 bp downstream
Tssr70632	transcription start site region 70632	874 bp downstream
Tssr70633	transcription start site region 70633	904 bp downstream
Tssr70634	transcription start site region 70634	936 bp downstream