rs38949938 SNP Detail

Summary

• ID
  rs38949938
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84393968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGGAGACCA GAGATGTGGC ATAGAGGCCT TGGGGCACAA
  GAACGGGTCT ATAGGTGTAG AGATGGGTTG TTTGGGGAAG AGATCTAACT GCAGATTGGA
  W
  CAGTCTCTGG AGACAGGCAC ACGGCCATTG GAAGAGATGA ACTATAAGTG GTGGCGTTGT
  TGGAACAGGG ACATCAAGGA CAGAGTTAAA AGGTGACCAA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51971825	NES14985931	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38949938					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971825	NES14985931	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84393968 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20651	CpG island 20651	360 bp proximal
Pkn1	protein kinase N1	within coordinates
Ptger1	prostaglandin E receptor 1 (subtype EP1)	within coordinates
Rr666279	regulatory region 666279	651 bp distal
Rr666280	regulatory region 666280	within coordinates
Rr666281	regulatory region 666281	514 bp proximal
Rr666282	regulatory region 666282	768 bp proximal
Rr666283	regulatory region 666283	1542 bp proximal
Tssr78279	transcription start site region 78279	680 bp downstream
Tssr78280	transcription start site region 78280	622 bp downstream
Tssr78281	transcription start site region 78281	457 bp downstream