rs38956778 SNP Detail

Summary

• ID
  rs38956778
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:59997441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGGTGATGGG AGGTGGCACA ACTTCTTGTC CTGCCTGAAT
  GCTCAACCAC AAAGAGAAAG CATCAGCAGT CACAGCGAGG CAGGAGCTAA CACGGGAGTA
  M
  GAGCCACAAA GAGCACAGGA CATATTTGTT TGCTATGTGG TACTTTGTTC ACCGTAAATG
  CCTCTTGAGC TTCCATCAGA ATCTAAAGCA TGTTTTCGTG T                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52023974	NES15040324	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	C	A		C	C	C	C
ss136530832	ENSMUSSNP4013900	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38956778					SNP	C	C	C	C	C	C	C	C	C	C	C	A	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52023974	NES15040324	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:59997441 () rs orientation: forward

Symbol	Name	Function Class
Rr196116	regulatory region 196116	1641 bp distal
Rr204367	regulatory region 204367	1684 bp distal
Rr209877	regulatory region 209877	within coordinates
Rr209878	regulatory region 209878	1960 bp proximal
Thsd4	thrombospondin, type I, domain containing 4	within coordinates