rs38963480 SNP Detail

Summary

• ID
  rs38963480
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:131425505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGCCCCC ACCATCATCT
  TCACTCCCTC CTCTGGTTGA AAACTCGTCA TTTATGTCAC TTGATGGGAC ACGACATCTC
  CATGCTCAGA TGGCTTTCTC AGCACAGTTT CTGTTTTAAG GTTCCTAAGT GGTACTTAGC
  TCATAGTGTC TTTGTGTGAA GGTTTTCTCT TCTCCCCACC TGGATCTCAG AGGACAGCAT
  W
  CCATATTCAG ACTTACTGCC TCCCTTCTGC AGACAGCCTC CGAACTGTAC CCCAGACTCT
  GTGATTTCCA GCCTGCCACA GAGTCATTTT GTTCCATCTT ACAATCATGA ACTGCCCATC
  CTCCACACTG CCTGTCTCCT TCACCAGCTT GTTTACCAGG AGCTTAGGCA GATTTACATG
  AATCACACCT TGTTATGGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51932575	NES14951462	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38963480					SNP	T	A	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51932575	NES14951462	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:131425505 () rs orientation: forward

Symbol	Name	Function Class
Gm34645	predicted gene, 34645	995 bp downstream
Gm44546	predicted gene 44546	237 bp upstream