rs38965091 SNP Detail

Summary

• ID
  rs38965091
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90884422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATACTCTGC TGTCCAAAAG
  TCCTGGGTCC TCTGATGGAG TCCTGGGTCC CACTTTGACA TGTTGACCTT GACCTTGAGT
  TCAGGGCCCT GCCTCTCAAC TGTAAGAGAT CTCTCCATCC CTGGGCACCA CTGACTTTCA
  CAAGCCTGGT GAAGCTGGGT GGTTCCAGAT CCATCCAGTC TTGGGCTTTC TGCTGAGGTG
  Y
  GTCAAAGGGA GCATTACTAA TCAGTCAAGA GAAAGGAGAG ATTGGTAACC AGACAGGCAG
  TCACCTACAA ATCTTCCTGC TGTATCCCTG CTTCCTCAAA GCAGTGATTT TGCCCTGAAG
  AGATGCACCG GAGTGTCTAG GTACCCAGGA CCCAACAGAA GGATTTGTCT TAAGTGATAC
  TAGATCGCCA CCTAGTGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51301152	NES14511533	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs38965091					SNP	T	T	T	T	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51301152	NES14511533	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90884422 () rs orientation: forward

Symbol	Name	Function Class
Rab17	RAB17, member RAS oncogene family	1433 bp downstream
Rr415504	regulatory region 415504	within coordinates
Rr415505	regulatory region 415505	182 bp proximal
Rr415506	regulatory region 415506	329 bp proximal