rs38966278 SNP Detail

Summary

• ID
  rs38966278
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51107047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGGTCAG TTGATAAAAC
  ATCTAGATGA CAGTAAGGCT CAGTAGTCTA TGACTGTAAT CCCAACACTG AAAGGCAGGC
  AGATTCTTAC ATCAAGCTGG CCAGCCAGCC TACCAAAAGT AACTCGAGAA GCAATAGAAT
  AAGACACCTG GTGTGGAGTT CTAGTCTCCA CATACCCGTA TATATATCCG CATATGCACA
  W
  ACTCTTGCAC ACACAAACAA ACACATACAC ACATATACAC ACCCAACGAG TAATAAGGAA
  TTTCAGAATT AATCCAATAT GTATGTATGT ATGTATGTAT GTATGTATGT ATGTATGTAT
  TGAAACAAGG TCTCACTAAA AAGGTCTGAC TGACCTGGAA CTACTATACA GATTCCAACT
  CACAGAGAGC CACCTGCCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ
ss51512147	NES14632194	PERLEGEN	MM_PANEL2	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ
rs38966278					SNP	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51512147	NES14632194	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51107047 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6408	CpG island 6408	687 bp proximal
Gm26782	predicted gene, 26782	662 bp upstream
Rr404075	regulatory region 404075	924 bp upstream
Rr491714	regulatory region 491714	389 bp proximal
Rr491715	regulatory region 491715	784 bp proximal
Rr491716	regulatory region 491716	960 bp proximal
Rr491717	regulatory region 491717	1891 bp proximal
Tep1	telomerase associated protein 1	within coordinates
Tssr125373	transcription start site region 125373	765 bp upstream
Tssr128379	transcription start site region 128379	235 bp upstream
Tssr128380	transcription start site region 128380	909 bp downstream
Tssr128381	transcription start site region 128381	967 bp downstream