rs38967018 SNP Detail

Summary

• ID
  rs38967018
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:24217208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAGGTGA GAGACAGTGA
  GAACCAAGGG GAGAGACAGG TGAGATTGTA TAGGTAGTGC GTAAACATCT GAAATTCAAA
  GAGAAGAGGC AAAAAACAAA GATAAAAGAA AGCAGAGTCA AGGGGAGTGT AGGAGGTGAG
  ATAGTGTGAA ACCAAGCCAG AAATGTGTTT ATTCGCAGAG TTCCTAGGTG AGCTTTCAAA
  M
  TGGAAATAAA GGCAGGAGTA TGCCTTGGGA TTTGGTTGTC TCTGTCAGCC AGATTTGGCA
  GGTTTAAAAA TATGAAACTA GTTCCATCTG AAGAGGTTCC TGTTTGGGTC ATTTCTCTCT
  CTTTTCTTCA GGAAAATCTC AGTTTTCTTC TGTGTGTGCA GTTGTCTGGG ACCCTGGGTA
  TCCGCAACTC TTAAGCGTCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50928105	NES13475622	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38967018					SNP	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50928105	NES13475622	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:24217208 () rs orientation: forward

Symbol	Name	Function Class
Col9a1	collagen, type IX, alpha 1	within coordinates
Rr408588	regulatory region 408588	1840 bp proximal
Tssr21	transcription start site region 21	471 bp downstream
Tssr6103	transcription start site region 6103	416 bp downstream