rs38971554 SNP Detail

Summary

• ID
  rs38971554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:12741475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCATAAT GGCTCTCATG
  TGCTGAGATT CCCATGTGAT GAGAAGAAAT GACACGGAGG TCATGGATAG ACCTCACAGT
  CCACTGTGAA AGCTCTTGAA GGACCTTCAA GCCCCACAGC TTCTTCTCAA AGAGGCCACC
  ATCTCCAATT GTGACAGGCA TCCCATCAGC CTCTTTTTCA GGGACCTTCT GTTCCAGAAG
  Y
  GCCATTAACT CCTCTAGCTG GTAGGCGAAG GCAGAAACTT GGAGCGTAAG AGTATGTATT
  GCCTGATGGA AGTCACCTTC AGTCGGGGTG AAATGCACTC TCTGGTCTTC TAAAAGCTTG
  GTTAACATCC CTTGGAAGGT ACGGTAAGCC TGGAGGTTCT CTTGGAGTCG CTCTGCCTCA
  GTCATCTCAC TCCAGCGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50620942	NES13637996	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38971554					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50620942	NES13637996	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:12741475 () rs orientation: forward

Symbol	Name	Function Class
Cntf	ciliary neurotrophic factor	within coordinates
Gm44505	predicted readthrough transcript (NMD candidate), 44505	within coordinates
Rr356731	regulatory region 356731	1475 bp distal
Rr361368	regulatory region 361368	1534 bp distal
Tssr158445	transcription start site region 158445	1307 bp downstream
Tssr158446	transcription start site region 158446	1336 bp downstream