rs38976712 SNP Detail

Summary

• ID
  rs38976712
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:92088854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACACTTG CTGGCTCTTT
  GTCCTGTTTA TAAACAGCTA TGACTTGAGT CTCAACGTTG TATTTTACCT TCTTTCATTA
  ACATCTTCAG AAAAGATCGA CAGTCAAATC CCTTTTGACC CATCTGTTCT ATTTATAAAA
  GCTCACTAGA CTCTACTAGC AAACGTATAG GTCTGTAAGA AAATATGTTG TGGTGTTACA
  W
  GTAGTCACAA AGCATAACAA ACAGCTTGGA AAACCATTAG TAGGGAACAT GTTAGGTTAA
  AGAGTGAGAT AACAAACATG TTAAGAACAT GTTGAGAACA TGTTAAGTGA GAATGAGATA
  ATCCTCAAGA TACTTAAGTC AATTAAGCAA GGTGCAGAAT ATGACTATTT GTATAAATGC
  TTGCATGTAG GTAGAATATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50605131	NES14041030	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38976712					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605131	NES14041030	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:92088854 () rs orientation: forward

Symbol	Name	Function Class
Fto	FTO alpha-ketoglutarate dependent dioxygenase	within coordinates
Rr178622	regulatory region 178622	1147 bp proximal
Rr191071	regulatory region 191071	255 bp distal
Rr191072	regulatory region 191072	1148 bp proximal
Tssr78731	transcription start site region 78731	1035 bp upstream