rs38978344 SNP Detail

Summary

• ID
  rs38978344
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92424802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCGGGCGC ATCCCTGCAG
  GTGAGCTCTG CTTGCTGGTT TCCACCGGCG GTCTAGAGAG AACTGGGCAT GTTTCCTCTT
  TGCTTGCTCC ATCCCTGCGG GACCTAGCCG CGGGGCTCCC TGCTTTGAGA TTGGCAGGGA
  CCTCCTTTCC TGCGCCCCGG GAAGCAGCTT GCCATCCTGC CTCTGTCTAC ACGCAGCGCT
  Y
  GGGACCCGGC TACGATCGGA CCCAGTGTGC TCCCACCCAC TCCTCCTTCC GTTACACTTT
  GGGGCGTCCC TGAGCCCTGG CCCTGGCCGG TGTTCGGAAG CTGAGCTAAA GCTAGTAGTT
  GGAGGCAAGT TCGTGTGAAC AAAACTTTCT GGGTTCAGCC AGAGGAGAGC CCCGCCGCCT
  ATTTGTCTCA ACGGGACTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52036443	NES15053664	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38978344					SNP	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52036443	NES15053664	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92424802 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	within coordinates
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	within coordinates
Tssr86520	transcription start site region 86520	477 bp downstream
Tssr86521	transcription start site region 86521	310 bp downstream