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rs38978430 SNP Detail
Summary
  • ID
    rs38978430
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr1:153725175 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGCAAGATGG GTCAGAAGCA
    AAGGGTATAT CTAGTTCTCC TAGAAATTAA ATCAATCAAT CAATCAATCA TCAATAATAA
    GTAGAATGAC CCTCTGGAAG CCTTACTCCA AGCCCACTTG GTCCTACCTG GCTGCTTTAC
    TTTCCATCTG GGGTGAGGAA CGTTCTTCCT ACCAAGGCTC CCTGATGCTT TAGCTCAACT
    K
    GGATTTCACT CACCTGGCAT CCAGCTATAG CATTACAGAA TAGCTATAGA TAGCATTTAG
    TTGCTTTGGC CCTTTGAGTA ACATTTCCCA GCAGAATCAC TGTGATACAG AATAAGCAAG
    CCATTGGATT TTATTATCCA TGGAAACCTG AGAGGTCTGG GGCTGGGCAA GTCTACTATT
    TGGAAACTTT ACTGAGATGA                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
ss51394648 NES14466014 PERLEGEN MM_PANEL2 f SNP G G G G G G T G G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
rs38978430 SNP G G G G G G T G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51394648 NES14466014 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:153725175 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr13180 regulatory region 13180 1975 bp distal
Teddm2 transmembrane epididymal family member 2 113 bp downstream
Tssr14286 transcription start site region 14286 1315 bp downstream
Tssr14287 transcription start site region 14287 1607 bp downstream
Tssr14288 transcription start site region 14288 1619 bp downstream
Tssr14289 transcription start site region 14289 1654 bp downstream
Tssr14290 transcription start site region 14290 1738 bp downstream
Tssr14291 transcription start site region 14291 1760 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory