AGCAAGATGG GTCAGAAGCA AAGGGTATAT CTAGTTCTCC TAGAAATTAA ATCAATCAAT CAATCAATCA TCAATAATAA GTAGAATGAC CCTCTGGAAG CCTTACTCCA AGCCCACTTG GTCCTACCTG GCTGCTTTAC TTTCCATCTG GGGTGAGGAA CGTTCTTCCT ACCAAGGCTC CCTGATGCTT TAGCTCAACT K GGATTTCACT CACCTGGCAT CCAGCTATAG CATTACAGAA TAGCTATAGA TAGCATTTAG TTGCTTTGGC CCTTTGAGTA ACATTTCCCA GCAGAATCAC TGTGATACAG AATAAGCAAG CCATTGGATT TTATTATCCA TGGAAACCTG AGAGGTCTGG GGCTGGGCAA GTCTACTATT TGGAAACTTT ACTGAGATGA K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss51394648 | NES14466014 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | T | G | G | G | G | G |
SNP Consensus Information | |||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
||||
rs38978430 | SNP | G | G | G | G | G | G | T | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51394648 | NES14466014 | PERLEGEN | MM_PANEL | f | SNP | G/T |
Location: Chr1:153725175 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr13180 | regulatory region 13180 | 1975 bp distal | ||||||
Teddm2 | transmembrane epididymal family member 2 | 113 bp downstream | ||||||
Tssr14286 | transcription start site region 14286 | 1315 bp downstream | ||||||
Tssr14287 | transcription start site region 14287 | 1607 bp downstream | ||||||
Tssr14288 | transcription start site region 14288 | 1619 bp downstream | ||||||
Tssr14289 | transcription start site region 14289 | 1654 bp downstream | ||||||
Tssr14290 | transcription start site region 14290 | 1738 bp downstream | ||||||
Tssr14291 | transcription start site region 14291 | 1760 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
||
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support. |
last database update 12/17/2024 MGI 6.24 |
![]() |
|