rs38989250 SNP Detail

Summary

• ID
  rs38989250
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85811151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAGAGTG TCATTTCCCC
  CGACTGTGGT GACAAAAACT CTTTGTGATG TAACTTGGGA GTCTCTGCTG TGGCACAGAT
  ACTAGGTCAC ATGACAGACT GCAGCGCCCC TCACACACCC AAGATTCTTC TTCCCAACTT
  CTTGGTGCAC ACATCCACTT TCTGTTGCCT GATTCCTGAT CTGTTTCCAT AAGTGCTTTC
  R
  GGAGATGTTT TTTCCTAGAC TTAACTGCCT GCTCTACCCT CACCAGTCAG CACCAGGTGG
  AATGTAGAAT GGAATGTAGA ACGGAGGACC AACCCCTCAG GAGGGATAGG AACCACGAGG
  TCAGATGAAA ACTGCTTGTT CCTCCTCTTT ATCTTCTGTC TCCCATCTTC TTGCTTAGTG
  CCATTTCTAA AGCGTAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51034519	NES14384598	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38989250					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51034519	NES14384598	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85811151 () rs orientation: forward

Symbol	Name	Function Class
D12Mit256	DNA Segment, Chr 12, Massachusetts Institute of Technology 256	1117 bp proximal
D12Mit256.3	DNA segment, Chr 12, Massachusetts Institute of Technology 256.3	1031 bp proximal
Flvcr2	feline leukemia virus subgroup C cellular receptor 2	within coordinates
Rr261860	regulatory region 261860	1751 bp distal
Rr261861	regulatory region 261861	within coordinates
Rr268751	regulatory region 268751	651 bp proximal