rs38989572 SNP Detail

Summary

• ID
  rs38989572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:132568817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAATCTC TGGTCATCAC
  CAAGGCCAGG ATCGCCAGCC TCCCTTCCTT CCTCCCCAAC CAGTAGCTAC CAGCCACCGG
  CCACCACCCC CATCCAAAGC ACTTTACAGA AATGAACAAG TCTGACAGAC AGGAAGACTG
  CCTTTTTAAA AACACTTAAA CTTGACATCC AAACACAGGT CTAGAACCCA CAACCTAAAC
  Y
  TGCACAGTCA GTGCACATAA GGCTTATGCT CTCATTAACA AAGCTCAACT TGGCACCCCT
  GAAACAATAA CACAATATCA GCAAAGATAA ATAAATAAAT TAAATAAATA AATAAATAAA
  TAAATAAATA AAGGGAAGAG AAAAGTTTCT CCACACCATT ATGTCAGGTG CCATGAAAGG
  CTACAAACCA ACCATATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51199116	NES13819786	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38989572					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51199116	NES13819786	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:132568817 () rs orientation: forward

Symbol	Name	Function Class
Auts2	autism susceptibility candidate 2	within coordinates
Cpgi16710	CpG island 16710	1417 bp proximal
D5Mit324	DNA segment, Chr 5, Massachusetts Institute of Technology 324	975 bp proximal
Rr621808	regulatory region 621808	1261 bp proximal
Rr621809	regulatory region 621809	1883 bp proximal