rs38990983 SNP Detail

Summary

• ID
  rs38990983
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149151746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA AGGCAGGAGA GGGTATGATT
  Y
  TAACTTTTAC GAGCAACAGC CACTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51052114	NES13892926	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T	T	C	T	C		C	T	T		C
ss136071458	ENSMUSSNP6192587	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss321019007	CHEV_3_149109073	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38990983					SNP	T	T	T	C	T	T	T	T	C	T	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052114	NES13892926	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149151746 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	within coordinates
Gm30382	predicted gene, 30382	608 bp upstream
Rr398127	regulatory region 398127	285 bp downstream
Rr587324	regulatory region 587324	1008 bp distal
Rr587325	regulatory region 587325	474 bp distal
Tssr36100	transcription start site region 36100	865 bp upstream
Tssr36101	transcription start site region 36101	844 bp upstream
Tssr36102	transcription start site region 36102	831 bp upstream
Tssr36103	transcription start site region 36103	740 bp upstream
Tssr36104	transcription start site region 36104	692 bp upstream
Tssr36105	transcription start site region 36105	614 bp upstream