rs38992945 SNP Detail

Summary

• ID
  rs38992945
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92422381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTGCTAT ACAGATTTTG
  GAGAATAAAA ACAAAACATT CATCTTGTGG TGAGAGACAA AGTATGCCAA ACCAATCAAG
  TGTAGGATAC AGAATGAGGT GGCTTATATT TTAGTGAAAT AATTTGAATT GTAGGCAAAT
  GGGTTAGGAT TGTTTCCGGT TCTGTGGAAT CTTTGTGTTT AGGGATGAAA ACAAAAATCA
  Y
  GAGTATGATG GGTCAAGCCA TAATACAGAG TTCCACAGTT TGGGTACAGG AAGCAGCCAC
  AGGAAAGTTG GCCAGTGATA AAAAGCTTGA ACCAGGGCAT CAAGAGGTAT GTTACTTAAG
  CAGGAAAGAA TGAATGGAAG AAGGCAGAGA AAATGTGAAG AAAAATATAA CAGTCCTCTA
  GGTTGGTGCT AGTGAGAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J
ss52036457	NES15053648	PERLEGEN	MM_PANEL2	f	SNP	C	T	T		C
ss323074138	CHEV_9_92435166	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J
rs38992945					SNP	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52036457	NES15053648	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92422381 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	1529 bp proximal
Gm37545	predicted gene, 37545	245 bp upstream
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	1895 bp upstream
Rr684631	regulatory region 684631	1704 bp distal
Rr684632	regulatory region 684632	1405 bp proximal
Tssr86520	transcription start site region 86520	1927 bp upstream