rs39003701 SNP Detail

Summary

• ID
  rs39003701
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:99665667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATAATAT TCAAGAAATG
  CAAACCTGGA GGAGTTACCC CCTTTGTGGT AGAGTTATCC TGTGTGCATA TGAAGGAAGA
  AAGATAGAGG CTATAAAACA GTACTAAGCG TGCACAGATA ACACAGTGAG ACGTAGCAGA
  GAATCCTCTC ATCTGATCAA TGCCAGTGTC TATTCATCCT GAAATAGCTC TCTTCCCAAC
  R
  ATCCATCTGA GTATCTGTGC AGATGAACAG ACCCTTTGCA ACCATTCAGT AAATACCTAC
  TGATCACACG CTCAGTGCAC TACAGACTCC CTCCACTGCT GACAGGCAGG ACCTACTTGT
  GGAGTTTGGG TTTTGCCTGT GCTGAAGTGT AAGCCCGGGA CAAGCACTCA ATATCCAACC
  TATATCCTTA GGCCCACACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51763821	NES14550584	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	G		G	G	G	G		G
ss325081769	CHEV_15_99598217	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39003701					SNP	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51763821	NES14550584	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:99665667 () rs orientation: forward

Symbol	Name	Function Class
Cers5	ceramide synthase 5	within coordinates
Gm17058	predicted gene 17058	within coordinates