rs39005720 SNP Detail

Summary

• ID
  rs39005720
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:57437762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAAATCA TTGATGCTGC
  ATTGCGAGCA TGTAGACGGT TAAATGATTT TGCTAGTGCT GTTCGCATCT TGGAGGTTGT
  TAAGGTCAGT AAAAAAATGA TGCTAAGGTT GTTCCAGAAT AGGTGGGCCA TATCACTTAT
  TGACACTGGT GATATGGCCT AGTACACAAT ATCCTTTTAA GTGTGGTTAT CCATGAAAGA
  R
  CATAGTCTAT AAAAATGATT TAAGGATCTA GGCATGCTTT TAATTCCAGC ACTTGGGAGT
  TTTAAACTGG TGGTCAGAAG CAGGTGGTCT CTGAATTTGA GGTCAGCCTA GTCTACATAG
  TAAGTTCCAG GACAACCAGG GCTACAGTAT AGTGAGAGCC TGTCTTTTTG GTTTTTTTTT
  TCTTTTTTTT TTTTAAAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50712765	NES14261696	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39005720					SNP	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50712765	NES14261696	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57437762 () rs orientation: forward

Symbol	Name	Function Class
Cox5a	cytochrome c oxidase subunit 5A	Intron
Gm26631	predicted gene, 26631	808 bp downstream
Tssr85310	transcription start site region 85310	1524 bp downstream