rs39006353 SNP Detail

Summary

• ID
  rs39006353
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114270418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCCTTTT ATCTTTTAAA
  CCAGCTAATG GGATTTGTTG CTGAAGAAAG GAACCACCAC AAGGTCTATC CGCCCCCGGA
  GCAGGTGTTC ACATGGACCC AGATGTGCGA CATCCGAGAT GTGAGTGGAG CTGGGGTCTG
  GCTAGAGAGG AATCTAACAG TGTTTCAGTT AAGCCACGGG CTGTTTCGTA GTGAGTGTGT
  K
  ATGGTAGACA TGGAAGGTGC CGGGTTTGGT TGTGTTCCGG GTAGAAAGCT GTGTGTGTGT
  CCAGCTGTTT AGTCTTTTAA CCAAACAAAG AAAATGCATG TATACATTTG CTTGTGTGCT
  TGCTTATTAT TATTATTCCC TTGTTATAGT TAGTGCTAGT TTATCTCAGT CTATTGAGTG
  TAGGCAACGC AGGACTGGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51798690	NES14715470	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39006353					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51798690	NES14715470	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114270418 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16310	CpG island 16310	503 bp distal
Gm73235	predicted gene, 73235	328 bp downstream
Gm73237	predicted gene, 73237	1643 bp upstream
Tssr48056	transcription start site region 48056	1981 bp downstream
Tssr48057	transcription start site region 48057	1913 bp downstream
Tssr48058	transcription start site region 48058	1179 bp downstream
Tssr48059	transcription start site region 48059	1137 bp downstream
Tssr48060	transcription start site region 48060	128 bp downstream
Tssr52695	transcription start site region 52695	1631 bp upstream
Tssr52696	transcription start site region 52696	760 bp upstream
Ung	uracil DNA glycosylase	within coordinates