rs39009813 SNP Detail

Summary

• ID
  rs39009813
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43115668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTGTCAA GAAGATGGGG
  AAGAACCAGC TGGAGCCAAG GGTGGGTGGT CCTGGGGAAG GATTCTCAAT CCAGTGAGCA
  GCAGAGTTAA ATTGAAGAGC GAGTTTTGAA AGAGAAAGGA CTAGTCAGCC TCGTAGGCTA
  GTAAGTAGGG TCCGTGAGCG TGGAAGGGAG GGAGTCACAA AGAGGCCAGA CCACGCAGGA
  R
  GATAGAGCTA CCTAGGAAAA GAGGCGGAGC GAAACCTGGA GGAGAAGTGG AGCATCCTGT
  GTAGAGGCAG GATAGGGGAA GATGGAAGGG CTAAGGCTGG AAAGTCTTTC GTCGGTTGCA
  GATCTGCCCC CCGGAGCCCC ACAATGCTCA GTTGAAGGAG GTCCTGTGGA CCGCAGCCTC
  CGCTTTCGCT GCTCCTGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51478094	NES13969842	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39009813					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51478094	NES13969842	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43115668 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18932	CpG island 18932	233 bp distal
Cpgi18933	CpG island 18933	within coordinates
Gm39000	predicted gene, 39000	within coordinates
Rr400282	regulatory region 400282	213 bp downstream
Rr645966	regulatory region 645966	1380 bp distal
Rr645967	regulatory region 645967	715 bp distal
Rr645968	regulatory region 645968	142 bp distal
Rr645969	regulatory region 645969	645 bp distal
Rr645970	regulatory region 645970	26 bp proximal
Rr645971	regulatory region 645971	333 bp proximal
Tssr66010	transcription start site region 66010	223 bp downstream
Tssr72134	transcription start site region 72134	1992 bp upstream
Tssr72135	transcription start site region 72135	654 bp upstream
Vsig10l	V-set and immunoglobulin domain containing 10 like	within coordinates