rs39009892 SNP Detail

Summary

• ID
  rs39009892
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66485650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGACAAG GGCTTTCTTC
  CATCTATAGG AAATTTGAAG GGGTGCCAGT GAGCCGACTA CACACACTGT CAGCATTAGT
  AAACCACTTT AGGAAAGGAA TCGTGCTTAT GTGATTCCTC TCTCCTAAGG CAAGCTAAGC
  CAGTCCTGGG ACCTGCACAG GTGTCCATGT TTATATTATC AAAGTAAAGA GACTTGATCA
  R
  TTTTGTAGTA TCCAAATTTT TCTTCTCATA GAGACAAGTG GGGAGGTATG CATTGATGAA
  TACTAGACAG TTGAATACCA CTATTGAAGT CCCCCTTAGA ATCTCCCATG GGTTACTATG
  AAACAATTCT AAGATGTAGT TACAGACTAA TTTGATGCAT TGCGCTCGTC TCTACATCCA
  GAGACTAGTT CAGACATTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50968200	NES13941212	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39009892					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50968200	NES13941212	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66485650 () rs orientation: forward

Symbol	Name	Function Class
Gm65110	predicted gene, 65110	1829 bp downstream
Rr665	regulatory region 665	within coordinates
Rr577850	regulatory region 577850	1248 bp distal