rs39011569 SNP Detail

Summary

• ID
  rs39011569
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:24526715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGCACAG AGGGCAAAGG
  TGCCTGCCAA CAGCCCCGTG ACCTGAAAGA TCCCCAGGAT CTACAAGGTG CAAGGAGAGA
  GCCAACTTCA GAAAGTTGTT TTCTGACGGA CAAACACTGG CATGCACACA AATAAATAAA
  CGTAAGGATA TTTTCAATGC CACTTTCGGT ACAATTACGA GAAATGTGAA CTGACTAGCA
  R
  ATTTAGCATC ACTGGTAACT CCTTAAAAAA AAAAAGTTTG GGCCTCGCTT AAGTGTACTC
  AAGGAGTAAG AGACAGTGAG CACTGACAAC GCTTTCGAGT TATGTGTGTA GACGGGAAGG
  AAAGAAATGG TGCAATTGCT GAAAGGGGGG ATAAATCACA GTGGTTTTGT TTAGGTTTGT
  TTGGTCTTGG TTGTTGTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51254299	NES13801024	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39011569					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51254299	NES13801024	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:24526715 () rs orientation: forward

Symbol	Name	Function Class
Asb15	ankyrin repeat and SOCS box-containing 15	1428 bp upstream
Cpgi17202	CpG island 17202	198 bp proximal
Ndufa5	NADH:ubiquinone oxidoreductase subunit A5	within coordinates
Rr399585	regulatory region 399585	790 bp upstream
Rr627233	regulatory region 627233	31 bp proximal
Rr627234	regulatory region 627234	844 bp proximal
Rr627235	regulatory region 627235	1439 bp proximal
Tssr55166	transcription start site region 55166	1470 bp upstream
Tssr55167	transcription start site region 55167	1495 bp upstream
Tssr59987	transcription start site region 59987	830 bp downstream
Tssr59988	transcription start site region 59988	1309 bp downstream