rs39012129 SNP Detail

Summary

• ID
  rs39012129
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58664265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCATTTGG ATCAATCAAG GGAACAGCCA GGGTCTCCCT
  TGGTTTATTG AAAAAGCAAT CTTCCAGAAC ATTCTTTCCC CTAGTTTACA ATTGGTCACC
  R
  CAGCCTGCTC TGCCAGGTGT CGTACTATGC CAGGCTGTGG ACTCAGTCAC AGAAAGCACC
  TGCCTCCCTG GAAGACTAGA ATCTGATAGA AATCTCTAAC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss50904009	NES13492686	PERLEGEN	MM_PANEL2	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs39012129					SNP	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50904009	NES13492686	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58664265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11111	CpG island 11111	134 bp proximal
Pnlip	pancreatic lipase	within coordinates
Rr361109	regulatory region 361109	665 bp distal
Rr365894	regulatory region 365894	1136 bp proximal
Tssr157271	transcription start site region 157271	768 bp downstream
Tssr157272	transcription start site region 157272	752 bp downstream
Tssr157273	transcription start site region 157273	365 bp upstream
Tssr157274	transcription start site region 157274	397 bp upstream
Tssr157275	transcription start site region 157275	417 bp upstream
Tssr157276	transcription start site region 157276	440 bp upstream
Tssr157277	transcription start site region 157277	681 bp upstream
Tssr157278	transcription start site region 157278	1303 bp upstream
Tssr157279	transcription start site region 157279	1320 bp upstream
Tssr157280	transcription start site region 157280	1336 bp upstream
Tssr159961	transcription start site region 159961	663 bp upstream