rs39012724 SNP Detail

Summary

• ID
  rs39012724
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5651348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATCAGGTT GCAAAATCCT TCCATTCTCA GAGCACTCTG
  GATAGTTCTG CCCCATCTCC AAAACCCTCC TGCTCCGTTC TTTGCTGCTT CTGAGCAGAG
  M
  CAGCCGCCTT CCCTCCTGTC TCTTTTCCAA TAACTCTCTT ATGTGAGGTT TGTTGTAGGA
  TGTGATTTCG TAGTATTTTT GGCTCCCAAC TGCCAGGATA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50578390	NES13651098	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39012724					SNP	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50578390	NES13651098	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5651348 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10461	CpG island 10461	373 bp proximal
Kat5	K(lysine) acetyltransferase 5	1694 bp downstream
Rnaseh2c	ribonuclease H2, subunit C	553 bp upstream
Rr363585	regulatory region 363585	252 bp proximal
Rr370434	regulatory region 370434	456 bp upstream
Tssr154457	transcription start site region 154457	521 bp upstream
Tssr154458	transcription start site region 154458	534 bp upstream