rs39016203 SNP Detail

Summary

• ID
  rs39016203
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129309744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAAGCTGAG AATTGGTGGG ATTCTGTGTT TTTTGCCTTG
  GTCTTGGGGT CTGGTCAGGA TCAGGGTCTT TCTTTAGCCC CTTTACCACA CAGAGATGGT
  K
  GCTGGAAAAC CCTCAGAAGC ACAAGGGTAA GCAGAAGGGC CCCTGCACAG TGCAGGTACA
  TGCCTTTGGT GAAATGCTCA CCTCTGAAAC ATGAGGGCCA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51417875	NES13721921	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39016203					SNP	T	T	T	G	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51417875	NES13721921	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129309744 () rs orientation: forward

Symbol	Name	Function Class
Clec2m	C-type lectin domain family 2, member m	985 bp upstream
Rr133301	regulatory region 133301	1057 bp proximal
Rr399984	regulatory region 399984	1078 bp upstream
Tssr63594	transcription start site region 63594	1002 bp upstream
Tssr63595	transcription start site region 63595	990 bp upstream
Tssr63596	transcription start site region 63596	974 bp upstream