rs39019355 SNP Detail

Summary

• ID
  rs39019355
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:96860462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCAGCCT TTATGTTTAG
  AACCCATATT CATGACCCCA GGGAATCTCC CTGGAGACTG ATATGGTAGA ATTTTATAAG
  CTCTTCACCA CCAACAAAAT ACTTATAATG TGATTTAGTC ATCGTAAGTC TCAGTGGAGG
  CTTATTTTAT TTTTCTGGTT GCCAAAGAGC AATAGAAGGA AGTCATGACC TTGTTCTGTG
  Y
  GCACTTACAG ACCTAACCTA AAGGACAGAC AGGATCACAT GAGATGTACT CTGCTCAACG
  GCAGGAGTGA TGCAACTTCC AGGTCATATG TTCCCACATT CGTGTCTCTG TGGTCTGGGT
  AATTGTGAAA TGGTTTGTTT TCTAACTAGA TTTGGGTACA AAAGGAAAAC AGTCACTTCT
  GTTTCATCAG AGCAAATGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51918195	NES14942303	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39019355					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51918195	NES14942303	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:96860462 () rs orientation: forward

Symbol	Name	Function Class
Gab2	growth factor receptor bound protein 2-associated protein 2	within coordinates
Tssr67956	transcription start site region 67956	1032 bp downstream
Tssr67957	transcription start site region 67957	928 bp downstream
Tssr67958	transcription start site region 67958	170 bp upstream
Tssr67959	transcription start site region 67959	247 bp upstream
Tssr73570	transcription start site region 73570	1207 bp upstream
Tssr73571	transcription start site region 73571	79 bp upstream
Tssr73572	transcription start site region 73572	within coordinates