rs39020737 SNP Detail

Summary

• ID
  rs39020737
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:46656668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGAATTA GGTCTAAAAA
  GTTTACCAAG TGGAGGTGAA CTTTGTACAG CCAAGACTTG CGTCTTGGCC TGAGTAATCA
  GGAGAAGGCA GAAACAAACG GAAAAAAAAA AAAAAAAGAA AAAGAAAAAG AAAAAGAAAA
  AAGAAAAAAA GGGGGGGGGG AGTTTATCAG AATTGCTTGC AGAGAGAGCA CTGCCTGTTC
  R
  TTTGGCTGCT TGGTTTGTTG GTAGACAGAG CTTTGCCATG GAACCCCAGG CTGACCTCAA
  ACTGTTAGCA ATCATTCTGC TTCCGAGCTG AGATTACAGG TGTGCTCCTC TGCTTCCGAG
  AGGCGGACTT ACTCTGTACC CAGACTAGCC AGGAACTCGC CATTAGCCCA GGTTGACTTC
  AAACTCACAA TCCTCCTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51103905	NES14353427	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39020737					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51103905	NES14353427	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46656668 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	Intron
Cpgi5539	CpG island 5539	559 bp distal
Gm35110	predicted gene, 35110	1267 bp upstream
Gm61509	predicted gene, 61509	within coordinates
Rr478915	regulatory region 478915	1334 bp distal
Rr478916	regulatory region 478916	1233 bp distal
Rr478917	regulatory region 478917	1016 bp distal
Rr478918	regulatory region 478918	277 bp distal
Rr478919	regulatory region 478919	162 bp distal
Tssr119597	transcription start site region 119597	1307 bp downstream
Tssr119598	transcription start site region 119598	1276 bp downstream
Tssr119599	transcription start site region 119599	1144 bp downstream
Tssr119600	transcription start site region 119600	1085 bp downstream
Tssr119601	transcription start site region 119601	1052 bp downstream
Tssr119602	transcription start site region 119602	1005 bp downstream
Tssr119603	transcription start site region 119603	278 bp downstream
Tssr122343	transcription start site region 122343	398 bp upstream