rs39031601 SNP Detail

Summary

• ID
  rs39031601
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67062329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAAAGAAAA AAAGTGGGGG GTGGGGGCGG GGAGGGAGGG
  AGGGAGGGAG GGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAATGAATG AATGAGAATG
  M
  ATATGAATAT AAGGTTGTGC ACAGGTAGGG AGATAAGGAG AATCTGAGAG GAATTAAGGG
  AGGGGGAAAG ATCTAACCAA AATATCTCAC CTGAAATTT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50729628	NES14251446	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	A	C	C		C	A	C	C		C
ss322989815	CHEV_9_67002854	CHEVERUD	SCREENING_POP	f	SNP								A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39031601					SNP	C	C	A	C	A	C	C	A	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50729628	NES14251446	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67062329 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr5	DNA segment, Chr 9, Derry C. Roopenian 5	518 bp proximal
D9Mit302	DNA Segment, Chr 9, Massachusetts Institute of Technology 302	515 bp proximal
D9Mit302.1	DNA segment, Chr 9, Massachusetts Institute of Technology 302.1	294 bp proximal
Gm19299	predicted gene, 19299	within coordinates
Gm40529	predicted gene, 40529	1338 bp downstream
Gm68695	predicted gene, 68695	within coordinates
Rr681887	regulatory region 681887	1357 bp distal
Rr681888	regulatory region 681888	922 bp distal
Rr681889	regulatory region 681889	1566 bp proximal
Tssr90326	transcription start site region 90326	172 bp downstream
Tssr90327	transcription start site region 90327	199 bp downstream