rs39031973 SNP Detail

Summary

• ID
  rs39031973
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113615786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTGGATG CAGTTCGGTG
  AGTGACACTA CTTACTCTGA GCCAGGACCC GAGATAGACA GACAGATCCA CGCCCCCCCA
  CCCCCACCCC GCCCCGTGTT ACCTGAGGCC GGGGATTCCT GTGTAGAACG CTGCTGCTTT
  GCTTTACTTT GCAGAACGAG CTGGAGCTGC CTATGAAGTT GCTTATAGCC TAGGGTGGTC
  W
  GCTCACTATG TAGCTTCTTG GCGAGTTTTG GCTGTCTGTA TGCTTGTAGA GCTGTTACCA
  GGGCTGTGAT CTACCTTGCA GCCTGTGGTA TCTGGGGCCA CCCTCCTAAC TTCCCTGAAA
  CTTGCCTTAA TCTATAAACT GCAGCTGACA AGGGTAGATT CTTTATACAG TTGTAAAAAT
  AAAATAGTGT CAACCGGGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss51840199	NES14765781	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T		T	T	T	A
ss321911248	CHEV_6_113588819	CHEVERUD	SCREENING_POP	f	SNP					A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs39031973					SNP	T	T	T	T	A	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51840199	NES14765781	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113615786 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17852	CpG island 17852	55 bp distal
Gm43964	predicted gene, 43964	1737 bp downstream
Irak2	interleukin-1 receptor-associated kinase 2	within coordinates
Rr399834	regulatory region 399834	248 bp downstream
Rr636556	regulatory region 636556	287 bp distal
Rr636557	regulatory region 636557	435 bp distal
Rr636558	regulatory region 636558	369 bp distal
Rr636559	regulatory region 636559	within coordinates
Tssr58237	transcription start site region 58237	281 bp downstream
Tssr62463	transcription start site region 62463	538 bp downstream