rs39032129 SNP Detail

Summary

• ID
  rs39032129
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:14016389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGAGTGC TAAGGCAATT
  AGGAGAGCAA ACAAAAGGAA GGATGCTTTT TAACCTTTCT TAAGAGAACA AGATGCTTTC
  AAGTTCTTTA GAAGTGCCTA TTTTTATACA GATGAGGTCA TCCAAATATC CCTGGAGCCA
  GCTGCCACCA GTCAGGGCTT TGGATGCCTG CTCTGCAATC CCTGCTGACC CACCACACTC
  S
  TTCACTTGGA AAGTCCCGAC TCTGGCAAAG AGCTGCCCTT GAAGTAGGTA CTTCAAAGGG
  GCCACAGGCT ACTGGAAAGC GTTCAGATCT CTTATCTGAG GAGCAGGTAA ATGAATCTGA
  TGACATTAGA GGATCTTGAC ATAATTGTAG GAGCCCTGTC CCTCAGCACT GTCCTTGCTG
  CTGGGACTAA GCTCTGAAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51988184	NES14998716	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39032129					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51988184	NES14998716	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:14016389 () rs orientation: forward

Symbol	Name	Function Class
1700019J19Rik	RIKEN cDNA 1700019J19 gene	within coordinates
Gm47559	predicted gene, 47559	1961 bp downstream
Rr199406	regulatory region 199406	within coordinates
Rr199407	regulatory region 199407	1412 bp proximal