rs39034654 SNP Detail

Summary

• ID
  rs39034654
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122067386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCCAACA AAACAAAAAC
  TAAAACACCT CAGCCAGGTG CTGTGGCCCA TGGATCCCAA CACTTGGGAG GCAGATGGAT
  ATCTGTGAGT TCAGGATCAG GCTGGTCTAA ATAGTGAGTT CTAGGGCAGC CAGGGCCATG
  TAGAGAGATC TTGTCTCAAA ACAAAAATCC TAAAACTCTT TTGATTCTGG CTAGTCTCTT
  M
  CTTCCATTGT AAAAAAACAA AAAACTTTAA TCCCCGTCCT TCACAACGTC TTTCACCTTT
  TTTATTTAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAGGCGTAC TTCAAATCCC
  GAGACATTTT AGTTAAATCC CACAGCTTTC TAATTATTCT CCGAAAACTT GGGTGCATTT
  AACATACATC CTTGTATCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss51020954	NES13905089	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs39034654					SNP	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51020954	NES13905089	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122067386 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13766	CpG island 13766	286 bp proximal
Dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2	659 bp upstream
Gm17494	predicted gene, 17494	within coordinates
Rr584272	regulatory region 584272	1922 bp distal
Rr584273	regulatory region 584273	161 bp proximal
Rr584274	regulatory region 584274	662 bp proximal
Tssr31491	transcription start site region 31491	634 bp upstream
Tssr31492	transcription start site region 31492	1816 bp upstream