rs39038220 SNP Detail

Summary

• ID
  rs39038220
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68600780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGCCACA CAGACATCCA
  TGCAGGCAGA ACACTCTTGG CCATGAAACC TTAAAATGAA GGAGAAACCT TACGAGAGGT
  TCCCTAAGGA ATCCCTGCAG AAGGGAGAGA TTGTTTTCCT AAGATGAGGT TTGGTGTGGA
  GGGGATGAGG TATTCAAAGT TAACTAGCCG CTCCTCACTC CTCTGCTGCC AAATACCAGC
  R
  CTGGGCTTCG AGACACAATA GAATTCGACC TTGTTTTCGT TTGGGTCACT ATTGCTCTCT
  AGTTGAACAC GGAATCCACG GGGGCACATT GCTGTCTGTC CTTTGTCACA CCCCAGGACC
  ACAGCTGCAT GGAAAAGTCA TCGCAGGCTT CAGTCAGAGA GCTGTTGACT TCCTAATATG
  TTGTGTAATT CTGTTCAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51541937	NES14683616	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39038220					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51541937	NES14683616	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68600780 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13252	CpG island 13252	1997 bp distal
Il12a	interleukin 12a	within coordinates
Rr578060	regulatory region 578060	within coordinates
Tssr29483	transcription start site region 29483	1936 bp downstream
Tssr29484	transcription start site region 29484	1797 bp downstream
Tssr29485	transcription start site region 29485	1512 bp downstream
Tssr29486	transcription start site region 29486	1490 bp downstream
Tssr29487	transcription start site region 29487	1378 bp downstream
Tssr29488	transcription start site region 29488	1360 bp downstream
Tssr29489	transcription start site region 29489	246 bp upstream
Tssr29490	transcription start site region 29490	292 bp upstream
Tssr29491	transcription start site region 29491	583 bp upstream
Tssr29492	transcription start site region 29492	631 bp upstream
Tssr29493	transcription start site region 29493	648 bp upstream
Tssr33509	transcription start site region 33509	1234 bp upstream