rs39040017 SNP Detail

Summary

• ID
  rs39040017
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5120357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAACATGTG TCTTCTTGGT GGTGCTGCTT GCCCTGGGCA
  TTGTGTACTG CACTCGCTGT GGCTCCCACG CACCCAACAA GCGGATCACG GACTGCTATC
  K
  CTGGGTCACA CATGCTGGGA ACAAGAGCTC AACAGAACCC ATGCCCCCCA GAGGCAGCCT
  TACAGGGGTA CAGACCTGTA GAACCAGTGT GTGATGGGGT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50580624	NES13651949	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39040017					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50580624	NES13651949	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5120357 () rs orientation: forward

Symbol	Name	Function Class
Cd248	CD248 antigen, endosialin	within coordinates
Cpgi10428	CpG island 10428	1268 bp distal
Cpgi10429	CpG island 10429	1198 bp proximal
Cpgi10430	CpG island 10430	1589 bp proximal
Gm46658	predicted gene, 46658	1897 bp upstream
Rr405800	regulatory region 405800	1668 bp upstream
Rr542920	regulatory region 542920	1538 bp distal
Rr542921	regulatory region 542921	1407 bp proximal
Rr542922	regulatory region 542922	1911 bp proximal
Tmem151a	transmembrane protein 151A	502 bp downstream
Tssr154384	transcription start site region 154384	1043 bp downstream
Tssr154385	transcription start site region 154385	883 bp downstream
Tssr154386	transcription start site region 154386	624 bp downstream
Tssr154387	transcription start site region 154387	576 bp downstream
Tssr154388	transcription start site region 154388	494 bp downstream
Tssr157540	transcription start site region 157540	1745 bp downstream
Tssr157541	transcription start site region 157541	1780 bp downstream