rs39042738 SNP Detail

Summary

• ID
  rs39042738
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5900368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTTCCAA AGCAGAATCC
  ATTTCATGGT CCTGGATCCT GGGGTTCTCA TATACCTGGA ACCCAGGGGC ACGGGGAAGG
  TTCTGGCCAT CAAGAGTGCA TGTTCTTGAG TAGGGCTTCT GTCCCTGGAG GTACATTCCG
  TTCCAGGCGC CACAACTGGG CTGGGCCGGG CCTCAAGTGC TGACTCACGA TGCCTGCAGC
  S
  CAACAGAAAG AGAGGGCTCA GCTGCCCCCT GCTGGTCACA GCTGGACCTG CTGTTCTGCA
  GGCTCAGAAA TGACTCTCCA CCCCTAGGCA CTGGACTTGG GGGTGGGGGG AAGGATCTGA
  ACCCAGGTAC AGTCCTGGAC TGGGTGGAGT GCCAGAGACT TCTGAAGGGC TTCCCAGTCA
  GGGACAAGGA CGGGTAGTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss50577058	NES13648095	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs39042738					SNP	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577058	NES13648095	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5900368 () rs orientation: forward

Symbol	Name	Function Class
Frmd8	FERM domain containing 8	634 bp downstream
Frmd8os	FERM domain containing 8, opposite strand	within coordinates
Gm59609	predicted gene, 59609	1926 bp upstream
Gm59610	predicted gene, 59610	1097 bp upstream
Rr370436	regulatory region 370436	within coordinates
Tssr154520	transcription start site region 154520	1818 bp downstream
Tssr154521	transcription start site region 154521	1672 bp downstream
Tssr157784	transcription start site region 157784	379 bp upstream
Tssr157785	transcription start site region 157785	326 bp upstream