rs39048162 SNP Detail

Summary

• ID
  rs39048162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165155425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATA GTTAAGCTAC CTGCTAATTA
  R
  CCCAAAAGTA AACTGCTTTT AATGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51401436	NES14455687	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs39048162					SNP	G	A	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51401436	NES14455687	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165155425 () rs orientation: forward

Symbol	Name	Function Class
Dcaf6	DDB1 and CUL4 associated factor 6	1644 bp downstream
Gpr161	G protein-coupled receptor 161	1111 bp downstream
Rr20301	regulatory region 20301	176 bp proximal
Rr25485	regulatory region 25485	101 bp distal
Rr25486	regulatory region 25486	1706 bp proximal
Tssr14767	transcription start site region 14767	1956 bp downstream