rs39048797 SNP Detail

Summary

• ID
  rs39048797
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:15892645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTACGGG GTGTGATGGG
  ACGAGGGCTG GGCAGCAGCA GCTCCTCCAA AGTTAAAAAG TGAGCCCCTA GACGAGAGCT
  CAATGCCAGC TTTACAGAAA GCAAGCTTGA TGCCATTGAG AGTAGGCGGT GGAGCCTACT
  GGTTGCACAA AAGTCCCAAA GAAGTGTTCC ACAGACAGTG AAGCTTACTG CATGAAGACC
  R
  ATCCCAAAGG AAGTAGGCAA TGGTCTGGGG ACGTCACGCA GCCTCTCACA CCGCACCCCC
  CCCCCTCCGT CTTGTCCCTG TAGACACGTT CGCCAGCAAG GTGGCCGCGC TGCAGGACCA
  GTGTGCCGAC GCGTCCATCG GTAACGTGAC CGGCTCCAAT GCGGTGAACG TGTTCCTGGG
  CCTGGGTGTG GCCTGGTCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51880853	NES14893759	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39048797					SNP	G	G	G	G	A	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51880853	NES14893759	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:15892645 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18359	CpG island 18359	within coordinates
Rr164335	regulatory region 164335	1937 bp proximal
Rr170009	regulatory region 170009	1646 bp distal
Slc8a2	solute carrier family 8 (sodium/calcium exchanger), member 2	within coordinates
Tssr64587	transcription start site region 64587	1464 bp upstream
Tssr64588	transcription start site region 64588	1475 bp upstream