rs39048871 SNP Detail

Summary

• ID
  rs39048871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3404109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAACTCTC CAGCAGGCTA
  CAAGTTTCCG CTGAACCTTT CACAGGCGAA ACATTCGGAA CTGCGCCTGC TCTGTTGGCA
  TAGTAACGCC CCTTCCCTAC TATTTTGAAA TGCAGATTCG GTTTCTAAAT TACGACAGTC
  GTAAACCGAG GTTTCCCGAC GGCGTCCTTG CTTTTCGACG GCAACAACTA TGGAGGCGTT
  Y
  AGTGTAAGAT TTGAAAGTGC TAGCAGTATC GAAGAGCGAA AAGAACAGAC CCGTAATGCC
  AGGGCCGAGG TGTTACGCCA GGTATCCCGG CTTTGGAGAA TTTTCTTTCT TCCTTTTTAA
  AACTGGGGTT GTACTAAGGG CTTCTGCATG CTAGGTAATC GCTTTCCGAG ATTTAGTTCT
  TGAAATACTT TCGTTTTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50638819	NES14033318	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39048871					SNP	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50638819	NES14033318	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3404109 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21331	CpG island 21331	within coordinates
Cwf19l2	CWF19 like cell cycle control factor 2	within coordinates
Rr401237	regulatory region 401237	441 bp downstream
Rr673633	regulatory region 673633	992 bp distal
Rr673634	regulatory region 673634	507 bp distal
Rr673635	regulatory region 673635	788 bp distal
Rr673636	regulatory region 673636	553 bp distal
Rr673637	regulatory region 673637	within coordinates
Tssr83616	transcription start site region 83616	59 bp downstream
Tssr83617	transcription start site region 83617	11 bp downstream