rs39049284 SNP Detail

Summary

• ID
  rs39049284
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67011800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTTTAGGA TATATTGAAT TGGATGAGTC CCAGAGGATA
  AGAAGGGAAG TGAGAACAGA AAGTTACTTG AAGAGATTAT AATGTTTTTG TTTTCTTTCT
  R
  GATTTGAAGC CATTAGACAG TGCAAACGGG GCCTCTCCAG GTGCACCTGT GTGCGACTCA
  CCTTTGCTGC CCCTGTGGGA CACACAGTAG GTGTGGCTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss50729976	NES14240671	PERLEGEN	MM_PANEL2	f	SNP	G			G	A			G	A	A	G
ss136577299	ENSMUSSNP4533979	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A			A
ss322989568	CHEV_9_66952325	CHEVERUD	SCREENING_POP	f	SNP							A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs39049284					SNP	G	G	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50729976	NES14240671	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67011800 () rs orientation: forward

Symbol	Name	Function Class
Gm10646	predicted gene 10646	within coordinates
Gm22145	predicted gene, 22145	163 bp downstream
Rr681876	regulatory region 681876	1362 bp proximal