rs39050644 SNP Detail

Summary

• ID
  rs39050644
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46653599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTATAACAT ATCCCAATAT GTAATATTGT AAAAACTGTA
  AAGCCATCTG GATGCGATCA GAGTGCAAGA AGGTTGCAGA AGTTTGTGAC CACACATGCC
  M
  TGGCCTTTTA TAGAGCAGTC TTACACATCT TCATATCTTG ATATCTGCAG CAGGCCCTGG
  GACCCGTTCC CCAGACACAG AAGGACAGCT GGGTTAAGTA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51103939	NES14353343	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	C	C	C	A	C	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39050644					SNP	A	A	C	A	C	C	C	A	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51103939	NES14353343	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46653599 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	1780 bp upstream
Cpgi5539	CpG island 5539	1660 bp proximal
Gm35110	predicted gene, 35110	within coordinates
Rr478915	regulatory region 478915	1554 bp proximal
Rr478916	regulatory region 478916	1736 bp proximal
Rr478917	regulatory region 478917	1837 bp proximal
Tssr119597	transcription start site region 119597	1736 bp upstream
Tssr119598	transcription start site region 119598	1775 bp upstream
Tssr119599	transcription start site region 119599	1914 bp upstream
Tssr119600	transcription start site region 119600	1926 bp upstream
Tssr119601	transcription start site region 119601	1990 bp upstream