rs39053463 SNP Detail

Summary

• ID
  rs39053463
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86414501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTGTTTT TTTTTAAATG
  TCAGTTGAAA ATTGCAGCCT GGGAGAGCTT GGTGTGAGGA CACCCAAGTT GGCTGGTTCT
  GAAGACAGGG AGGTGAGGAT CACAAGGTCT TTCATGAACC ACTGCACACT TAATGAGAAA
  GGAGAGAAAC AGCATCCAGA AAGATGTTGT CTGCATGTCT CTCTATTGGA GGGCTTGACA
  Y
  TGAACTATAG AACAAAGGAG AAACACTTCC CAATGCCAGG CAAAGAAATG AGGGTTGATG
  CTCTCTGGTC ACCACTTGAG GCAGTTGCTA GGAACTAACT AGCCATGTGA TCCAGGTATA
  AATATGAATG CTTTTGAACT TAACAGCAAA TAAAAATTGT GGCGAGAGGA AACATCTCTT
  TTTTTAGTTC CTTCAGTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51753280	NES14806734	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39053463					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51753280	NES14806734	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86414501 () rs orientation: forward

Symbol	Name	Function Class
C87436	expressed sequence C87436	855 bp upstream
Cpgi17664	CpG island 17664	571 bp proximal
Gm44790	predicted gene 44790	within coordinates
Gm66311	predicted gene, 66311	within coordinates
Rr368111	regulatory region 368111	995 bp upstream
Rr399735	regulatory region 399735	668 bp upstream
Tssr57468	transcription start site region 57468	841 bp upstream
Tssr57469	transcription start site region 57469	896 bp upstream
Tssr57470	transcription start site region 57470	1147 bp upstream
Tssr57471	transcription start site region 57471	1195 bp upstream
Tssr57472	transcription start site region 57472	1229 bp upstream
Tssr61792	transcription start site region 61792	1099 bp downstream