rs39060685 SNP Detail

Summary

• ID
  rs39060685
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:34271615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCACCGT CAGTGCTCTC
  TGTGTAGTGG CCTTTTGCCA AGGTATTTCC TGTGCTGCTC CAGCTTGTCG GGAAGAAAGA
  ATACACCAGA CACACATAGG AATCCCGGCT TTTGTCATTC AGATTATGAT GGGCAAGGTG
  GGGACTATTC TTGGGATACC TCAGATAATC TTTTAGGTAT ACTTTTGTTT CTAAAGATAA
  M
  ATTTCCATGG CTTAATGACC TTCGGAAAGG CTGAGATCCT GAGTGTTGGG GAGATGTTGA
  TTGCAGTTAC CAAGCTACAG CCAAGGGGAG TAAAAACCCT GCTGTGCTGT TGCTATAGAA
  ACAACAATGT CTGTCCATGT CAGGAAGCTG AGAGGATTCT AATATTTTAC CATATGGAAA
  TGTTGGAGAT GAGAATGCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51083409	NES14363171	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39060685					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51083409	NES14363171	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:34271615 () rs orientation: forward

Symbol	Name	Function Class
4930447K03Rik	RIKEN cDNA 4930447K03 gene	within coordinates
Gm47065	predicted gene, 47065	within coordinates
Rr281206	regulatory region 281206	585 bp proximal