rs39061396 SNP Detail

Summary

• ID
  rs39061396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:83902685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCGGGGG CCTTCCCAAT
  TTGCTGCTTA CTTATTTTTA AGATGCATAA TAACTGAACA CTCAACTTGA GTTTATTTTA
  ATGCAAATTT AAGTCAATCT TAAAGCAAAC TTCAGATAGT AAAATTGGCT TGAAAGAGGT
  AGGATTTACT CAAAGGCTGC AAAGACACCT GTCTCCAAAA GCCAGGCCAA CTGAGGAAGC
  Y
  GAGTTGCTCT CTGAGCTCAC ACCAGGTCCT GGCTGCAGGC TCTCACGAAC ATTTCTGCCA
  AGTGCTTCCC CTGACCTGAC TGCAGCCAGT AGCATCCGCC CAGCATGAAG GTCAGGGCTT
  CTCTCTGGTA GTTCTGTTTT CAAGTGTAGA AATGTGTAAA TTCCCTGAGG TCAGAGACCA
  GCAAACTTCC TTATTCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51569525	NES14675016	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39061396					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51569525	NES14675016	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83902685 () rs orientation: forward

Symbol	Name	Function Class
Rr578945	regulatory region 578945	1822 bp distal
Rr578946	regulatory region 578946	1896 bp distal
Rr578947	regulatory region 578947	311 bp distal
Rr578948	regulatory region 578948	within coordinates
Rr578949	regulatory region 578949	697 bp proximal
Rr578950	regulatory region 578950	1393 bp proximal
Tmem131l	transmembrane 131 like	Intron