rs39064220 SNP Detail

Summary

• ID
  rs39064220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:123830504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTATGCTGT TCTAGAGCGT
  TCACCCTACC AGGACGTTCA GGGGCATCTC GGTACAGAAA GTATCTCGGT ATTCAGAAGT
  GTAAAGAGTT TTGTAACAAG GATCGGTGGG TTTCTTGTCA GTGTGGGCTT CCTGAGGGTG
  GGGTAAGGAT GGCTTTCTTC TGTTCCTTCA GTGGAGCTGT AGTCAGCCAG CGCACCGGGA
  Y
  GGAAAATGCT AGGTGCTGCA GGCCCAGGCA GCCTGATCCT TGGGAACTAA AGCAGACCCC
  GTGATAATGG GGTCTATAAG TAACAGGCAT GAGATGGAAG CTGGACTCAA CTTTTTCTTA
  CTCTTAAAAC AGGCTGAAGA ACTTAAGCTG GCCACCCAGC TGACAGGACC TGTGATGCCC
  ATCCGGAATG TAAGTGGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50631617	NES14029307	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39064220					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50631617	NES14029307	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:123830504 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21239	CpG island 21239	163 bp distal
Mir7079	microRNA 7079	1210 bp upstream
Rpl13	ribosomal protein L13	within coordinates
Rr672355	regulatory region 672355	1405 bp distal
Rr672356	regulatory region 672356	1650 bp proximal
Snord68	small nucleolar RNA, C/D box 68	660 bp downstream
Tssr79911	transcription start site region 79911	1414 bp downstream
Tssr79912	transcription start site region 79912	1345 bp downstream
Tssr79913	transcription start site region 79913	1311 bp downstream
Tssr83335	transcription start site region 83335	1485 bp upstream