rs39073942 SNP Detail

Summary

• ID
  rs39073942
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:72834060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGCTCAG GCATCCAGAG
  TGCACGCTGC TAACACATGA GGGCCTGAGC TCCTATCCTT AACACCTAGA GAACTCTCTC
  CCAGTAGCAG GTAAGGATAA AGACCACTGA TATTCTCTGG CTCCCTGGAT TGGCCTTTTC
  CATCACAGTC CTTGCCATGA ATTGTGGTCT AGACTTAGGT CTGTATTATC TACCAAGGCC
  W
  GTGTGCTTAG CTTTAACTGC CATCTTGACA TGACCTAGAA TCACCTAGGA AGAGAGTCCT
  TTGCAAGGAA TTCTCTACCT CGGGTTGGCC TGTCGGCATG GTGGGATGTG ACAGATTGTC
  CCTCTTATCA ACTGAGTTGG GAAGACCCAT CCTGGTGGTG TGTGATAGCC CTTCACACTA
  ATCCATGGAC GGTGTAAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51500077	NES13951206	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39073942					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51500077	NES13951206	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:72834060 () rs orientation: forward

Symbol	Name	Function Class
Gm20083	predicted gene, 20083	within coordinates
Gm28746	predicted gene 28746	702 bp downstream
Rr648885	regulatory region 648885	358 bp distal
Rr648886	regulatory region 648886	148 bp distal
Rr648887	regulatory region 648887	243 bp proximal
Rr648888	regulatory region 648888	1071 bp proximal
Rr648889	regulatory region 648889	1304 bp proximal
Tssr67187	transcription start site region 67187	1454 bp upstream
Tssr67188	transcription start site region 67188	1486 bp upstream