rs39077549 SNP Detail

Summary

• ID
  rs39077549
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:35290603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAGAAGA CTGTGTGTGC
  CTGTTCCTGC TTCAAAGTTC TAGCATGAGC CATTCTCTCA GGATGACACA GCAGGGCTCG
  AGGACCGCAT CAAGTCATGC CTCAGGGCCT GGAATAGGCT GATGAGGGAC TGAGCCCAGA
  TGTCCTTCTG ATGCCCTTCA GATAAGGCTG TCCGATAGGC TGTGTACGCC AGGGTTAATG
  Y
  TATCCTCTCA AAGTCTTCTT TCTTGAGGAT TCCAGGGTGG TTTGCCAGGT TGGCACTCAG
  CCTTCGGATA TCTGGGATAC GCTTGGGGAT TATGTTATTG CAGATTGAGT GGAAACTCAA
  GGCCTTCCGC AGGGAAGCTA GCTCCTCGTC CTTGATGGAG ATCTCCAGGT CTGGGCTGAT
  CTCAATTTCA GCTAGCAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51275687	NES13782075	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs39077549					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51275687	NES13782075	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:35290603 () rs orientation: forward

Symbol	Name	Function Class
Fam180a	family with sequence similarity 180, member A	within coordinates
Rr140102	regulatory region 140102	1598 bp proximal