rs39078184 SNP Detail

Summary

• ID
  rs39078184
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60661431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTACCTCCC CCTTCACGTA GGCACAGCAT ACATGTAAGA
  CAAGCAAATA GAAATCTCTC ATTTGGGGGT TGAGGTGGTA GCATAATCGG TAAAATGCTT
  R
  TAGATATGTG TTATTAGACG CGTTCTCACG ACCGGCCAGG AAGAACACCA CAGACCAGAA
  TCTTCTGCGG CAAGGCTTTA TTGCTTACAT CTTCAGGAGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ
ss50418772	NES13464113	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ
rs39078184					SNP	G	A	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418772	NES13464113	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60661431 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	1638 bp distal
Dctn4	dynactin 4	within coordinates
Gm58902	predicted gene, 58902	1932 bp upstream
Gm58903	predicted gene, 58903	63 bp downstream
Rr351670	regulatory region 351670	360 bp proximal
Rr352957	regulatory region 352957	630 bp distal