rs39078658 SNP Detail

Summary

• ID
  rs39078658
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97804166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTTTATTG TCACACGTGA AGGAAAGCAC CAACCGTCCA
  AGTTTCCAGA GCTCTTGCTC CTGAATCCTT ATCTGTCACG TATCTCTAAC TCCCACGGGA
  R
  ATGTTAAAGC CTTCTGGGAG ACATTATCAA TAGTGACTCT TGGGCTGAGT CTTAAGCCTC
  ATTAAAGGCC CTCAGCCTTG TAATAGTGAT CAGCCAGTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51375361	NES13725653	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39078658					SNP	A	A	A	A	A	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51375361	NES13725653	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97804166 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Rr635225	regulatory region 635225	1730 bp proximal
Tssr1945	transcription start site region 1945	108 bp upstream
Tssr57866	transcription start site region 57866	236 bp downstream
Tssr57867	transcription start site region 57867	29 bp upstream
Tssr57868	transcription start site region 57868	48 bp upstream
Tssr57869	transcription start site region 57869	74 bp upstream
Tssr57870	transcription start site region 57870	240 bp upstream
Tssr57871	transcription start site region 57871	260 bp upstream
Tssr57872	transcription start site region 57872	1034 bp upstream
Tssr57873	transcription start site region 57873	1085 bp upstream
Tssr57874	transcription start site region 57874	1095 bp upstream
Tssr57875	transcription start site region 57875	1112 bp upstream
Tssr57876	transcription start site region 57876	1147 bp upstream