rs39083680 SNP Detail

Summary

• ID
  rs39083680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131002791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTACGCTA CCATTCACAA
  CAGGAGCAAA ACTACAGTTA GGAAGTAGCG GTGGAAATAA TTTTATGGGT GGGGGTCACC
  ACAGTGTGAG GGAACTGTAT TCAAGGGCCA CAGCATCAGC AAGGTTGAGA AGCACCGCTC
  TAAAGAGAGG TGAAATCACC CCAGCCGTCT TTCAGTCCTG AGAGGGCAAT GCCCAGTCTG
  Y
  GTACCCACCA AGGCCTGGGC AGGGTGCGGG CAGAGGCTCT GCCTCCAGGG AAACCTCATA
  GGTATCTTAC AGTCATACAT TCAGGGGCTT CACACTCCAG TTCACACCCA GCCTGCTCAG
  TGGTACCCAC CCTCCCACCT CAACCCTCTG GCCTGGAGCT CCTCCACTTT GTTTTTTTCC
  TAGGAGTTCC CCTGAATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51634424	NES14649191	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39083680					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51634424	NES14649191	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131002791 () rs orientation: forward

Symbol	Name	Function Class
Lef1	lymphoid enhancer binding factor 1	Intron
Rr367559	regulatory region 367559	195 bp downstream
Rr585291	regulatory region 585291	927 bp distal
Rr585292	regulatory region 585292	983 bp distal
Rr585293	regulatory region 585293	31 bp distal