rs39085706 SNP Detail

Summary

• ID
  rs39085706
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16677270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTGGTTT TGTTCTGTTC
  GTGTTTATTA TTTAACAAAT GCTTATGTAA CCTCAGGCCT GATAAACAGC ACACACAGCC
  GTTGTTCAAG GAGAGGCAAC TAAGCCAGCT TCTCTCCCCT CACTCTCATG GGCTGGGGTC
  TCCAGGAGAC CCTTAGGAAA AGGAACAATG GCTGTCACCA TTTCACAGAG AAGCAAACAG
  R
  TCAGGGAAAG TTCTAGAAGA TTCTCGAAGT TGCTGCTGAG AAAGCAATAA GGATAGAATA
  TAAATCCAAC AGATAGTCTA TTCAACTCAT AGAGGGAGGG ACAGGCAGCT CAAGGGCCTT
  TAAAGCAATG GACCATGGGT ATGGTGGTAG GTGAGAGCTG ACCTAAAAGT TGTCCTCTGA
  CCTCCATACA TATGCTGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51882299	NES14894126	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	G	A	A	A	A	G	A	G	A
ss148399924	ENSMUSSNP4842692	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs39085706					SNP	G	G	A	A	A	G	G	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51882299	NES14894126	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16677270 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	1109 bp proximal
Gm71929	predicted gene, 71929	1947 bp downstream
Pnma8b	PNMA family member 8B	1337 bp upstream
Rr368243	regulatory region 368243	1111 bp upstream
Rr642821	regulatory region 642821	within coordinates
Rr642822	regulatory region 642822	847 bp proximal
Rr642823	regulatory region 642823	1260 bp proximal
Tssr64660	transcription start site region 64660	1300 bp upstream