rs39086481 SNP Detail

Summary

• ID
  rs39086481
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20369412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTGGTCA GGGGGTTGCT
  GTGCTCCTGA AAAAAAAAAA AAGAAAGAAA GAAAGAAAAG AAAAGGAGAA AAAAGATGCA
  GGAAGCCGAA CTCCCAGGGC AGAGTCTGCT GGAGGCTTTG CCTCCAGTGC TTAAGTGTAG
  CCTCCATCTT TCTTTGGGGA CCCAGGGCGC GGTTGGCTGT GCCGCTGTGG CTTCATTCTC
  Y
  GGGGCGCCAA GGGGAGCATT TCTCATACAC CAGTGAAAAC AGGAAGTGAT GATGAAGCTA
  GTTTGCCTTG CATCTGCGCT GAACTACTTT CTTTTTGTCA TTCTTCATTA GGTTTAGACA
  CGTGTGCCGG TCCACGCGGT AGGACCTCCG TTTCTACCTG CTTTGTACTT CCTCCAGTCA
  CACAATGCCG CCGCCTTCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51076117	NES14368654	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39086481					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51076117	NES14368654	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20369412 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5309	CpG island 5309	8 bp proximal
Elmo1	engulfment and cell motility 1	within coordinates
Rr403595	regulatory region 403595	within coordinates
Tssr118580	transcription start site region 118580	253 bp downstream
Tssr118581	transcription start site region 118581	231 bp downstream
Tssr118582	transcription start site region 118582	45 bp upstream
Tssr118583	transcription start site region 118583	80 bp upstream
Tssr118584	transcription start site region 118584	161 bp upstream
Tssr118585	transcription start site region 118585	174 bp upstream